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Acknowledgements

This work was conducted by Malachi Griffith under the supervision of Marco A. Marra. In addition to the authors and funding sources listed below I would like to acknowledge the advice and support of the following people: Joseph Connors, Stephane Flibotte, Steven Jones and Gregg Morin.


Citations:

Malachi Griffith and Marco A. Marra.
Alternative expression analysis: experimental and bioinformatic approaches for the analysis of transcript diversity. 2007. Chapter 12. Genes Genomes and Genomics, Volume 2. p201-242. Regency Publications.
Download: PDF


Malachi Griffith, Michelle J. Tang, Obi L. Griffith, Ryan D. Morin, Susanna Y. Chan, Jennifer K. Asano, Thomas Zeng, Stephane Flibotte, Adrian Ally, Agnes Baross, Martin Hirst, Steven J.M. Jones, Gregg B. Morin, Isabella T. Tai and Marco A. Marra.
ALEXA - A microarray design platform for alternative expression analysis. Nature Methods. Feb 2008. 5(2):118.
Download: Pubmed | Full text | PDF | Supplementary Information


Malachi Griffith, Obi L. Griffith, Ryan D. Morin, Michelle J. Tang, Ying-Chen Hou, Trevor J. Pugh, Rodrigo Goya, Jill Mwenifumbo, Suganthi Chittaranjan, Adrian Ally, Jennifer K. Asano, Susanna Y. Chan, Haiyan I. Li, Helen McDonald, Kevin Teague, Yongjun Zhao, Thomas Zeng, Allen Delaney, Martin Hirst, Gregg B. Morin, Steven J. M. Jones, Isabella T. Tai, Marco A. Marra
Alternative expression analysis by RNA sequencing.
Download: In preparation.


Malachi Griffith, Jessica E. Paul, Trevor J. Pugh, Michelle J. Tang, Ying-Chen Claire Hou, Ryan D. Morin, Jennifer K. Asano, Adrian Ally, Lisa Miao, Pierre Cheung, Alison Lee, Susanna Y. Chan, Greg Taylor, Tesa Severson, Grace S.W. Cheng, Karen Novik, Richard Moore, Sharlene Gill, David Owen, Carl J. Brown, Gregg B. Morin, Isabella T. Tai1 and Marco A. Marra.
Novel mRNA isoforms and mutations of uridine monophosphate synthetase are associated with fluorouracil resistance in colorectal cancer. (Characterization of a single candidate gene in cell lines and a clinical cohort)
Download: In preparation.


Funding

We are grateful for funding provided by the following organizations: the University of British Columbia, Faculty of Graduate Studies and Faculty of Medicine, Michael Smith Foundation for Health Research, Natural Sciences and Engineering Research Council, Genome British Columbia, Terry Fox Foundation, National Cancer Institute of Canada and BC Cancer Foundation.


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